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The Signaling Pathways Project
A multi-omics knowledgebase for cellular signaling pathways
Analysis of the mouse strain- and diet-regulated Pparg and Nr3c1 white adipose tissue (WAT) cistromes and the human PPARG subcutaneous WAT cistrome
Overview
Dataset Name :
Analysis of the mouse strain- and diet-regulated Pparg and Nr3c1 white adipose tissue (WAT) cistromes and the human PPARG subcutaneous WAT cistrome
Description :
(1) Inguinal and epididymal WAT were isolated from male C57B1/6J, 129S1/SvImJ, and B6129SF1/J mice fed a normal chow diet or LFD (10% kCal from fat) for 12 weeks prior to Pparg or Nr3c1 ChIP-Seq; (2) Subcutaneous WAT was isolated from human patients prior to PPARG ChIP-Seq.
Dataset Type :
Cistromics (ChIP-Seq)
Release Date :
November 07, 2017
DOI :
10.1621/LLG1ScG4tb
Version :
This is Version 1.0 of an annotated derivative of the original dataset, which can be found in SRP051499
Dataset Citation :
Soccio RE, Chen ER, Rajapurkar SR, Safabakhsh P, Marinis JM, Dispirito JR, Emmett MJ, Briggs ER, Fang B, Everett LJ, Lim HW, Won KJ, Steger DJ, Wu Y, Civelek M, Voight BF and Lazar MA (2015) Analysis of the mouse strain- and diet-regulated Pparg and Nr3c1 white adipose tissue (WAT) cistromes and the human PPARG subcutaneous WAT cistrome, v 1.0 Signaling Pathways Project Datasets. 10.1621/LLG1ScG4tb
Download Citation :
Associated Article :
Soccio RE, Chen ER, Rajapurkar SR, Safabakhsh P, Marinis JM, Dispirito JR, Emmett MJ, Briggs ER, Fang B, Everett LJ, Lim HW, Won KJ, Steger DJ, Wu Y, Civelek M, Voight BF and Lazar MA (2015) Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo. Cell 162 33-44 View Abstract | View PubMed
Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo.
Download Dataset
Experiments

There are 33 Experiments for this dataset. Up to the top 100 MACS2 peak scores are displayed for each. Please download the dataset to view all data points.

  • 1 | Nr3c1 ChIP-Seq - inguinal WAT, 129
  • 2 | Nr3c1 ChIP-Seq - epididymal WAT, B6
  • 3 | Nr3c1 ChIP-Seq - inguinal WAT, B6
  • 4 | Nr3c1 ChIP-Seq - epididymal WAT, 129
  • 5 | PPARG ChIP-Seq - patient 9
  • 6 | PPARG ChIP-Seq - patient 3
  • 7 | PPARG ChIP-Seq - patient 4, Rep 2
  • 8 | PPARG ChIP-Seq - patient 8, Rep 2
  • 9 | PPARG ChIP-Seq - patient 8, Rep 1
  • 10 | PPARG ChIP-Seq - patient 1
  • 11 | PPARG ChIP-Seq - patient 7
  • 12 | PPARG ChIP-Seq - patient 11
  • 13 | PPARG ChIP-Seq - patient 10
  • 14 | PPARG ChIP-Seq - patient 4, Rep 1
  • 15 | PPARG ChIP-Seq - patient 5
  • 16 | PPARG ChIP-Seq - patient 2, Rep 1
  • 17 | PPARG ChIP-Seq - patient 12
  • 18 | PPARG ChIP-Seq - patient 6, Rep 2
  • 19 | PPARG ChIP-Seq - patient 2, Rep 2
  • 20 | PPARG ChIP-Seq - patient 6, Rep 1
  • 21 | Pparg ChIP-Seq - 129 LFD, Rep1
  • 22 | Pparg ChIP-Seq - B6 LFD, Rep1
  • 23 | Pparg ChIP-Seq - epididymal WAT, F1, Rep2
  • 24 | Pparg ChIP-Seq - epididymal WAT, 129, Rep2
  • 25 | Pparg ChIP-Seq - inguinal WAT, B6
  • 26 | Pparg ChIP-Seq - epididymal WAT, F1 , Rep1
  • 27 | Pparg ChIP-Seq - epididymal WAT, 129, Rep1
  • 28 | Pparg ChIP-Seq - epididymal WAT, B6, Rep2
  • 29 | Pparg ChIP-Seq - inguinal WAT, F1
  • 30 | Pparg ChIP-Seq - epididymal WAT, B6, Rep1
  • 31 | Pparg ChIP-Seq - 129 LFD, Rep2
  • 32 | Pparg ChIP-Seq - B6 LFD, Rep2
  • 33 | Pparg ChIP-Seq - inguinal WAT, 129
Gene List
Experiment Information
Name : Nr3c1 ChIP-Seq - inguinal WAT, 129
Description :

Inguinal WAT isolated from 129S1/SvImJ mice was subjected to Nr3c1 ChIP-Seq.
Tissue/Cell line : WAT, inguinal
Species : House Mouse
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